PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g074800.1.1
Common NameLOC104648015
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 327aa    MW: 35814.4 Da    PI: 6.8349
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g074800.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012137159123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  Solyc06g074800.1.1 137 YECKTCNRTFPSFQALGGHRTSH 159
                         99*********999998888777 PP

2zf-C2H213.60.0002221243123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  Fs+   L  H+r+H
  Solyc06g074800.1.1 221 HECSICGAEFSSGQALGGHMRRH 243
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.0E-13136161IPR007087Zinc finger, C2H2
SuperFamilySSF576677.28E-8136159No hitNo description
SMARTSM003550.059137159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408137164IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576677.28E-8216243No hitNo description
SMARTSM003550.01221243IPR015880Zinc finger, C2H2-like
PfamPF139128.5E-13221245IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743221243IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEFSEDSIDR TLVFKGKRSK RPRQFMAVAM VTSTSSTAAA DDSAGGGGSG GDGGEDVYNY  60
SSSMQYSSST TSTTQISTTS STEEDEDMAN CLILLAQSGR CQKLQVESTE RKMVKISSRK  120
FTEMATTTPG KAGFYVYECK TCNRTFPSFQ ALGGHRTSHK KIKTEEKKST ADSVSPSIDH  180
HHQQQQQEEK INRIVTAPTQ IVNKGNSNLH SNLINKQPKI HECSICGAEF SSGQALGGHM  240
RRHRPPTITA TNTKITVDET SNNTSDNLSH DDDQNSKKPK LFLSLDLNLP ASPEDDHHRD  300
DNNNFEFSAN QQSLLFSAAA LVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g074800.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322414.10.0zinc finger protein ZAT5-like
TrEMBLA0A3Q7H0N20.0A0A3Q7H0N2_SOLLC; Uncharacterized protein
STRINGSolyc06g074800.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-51C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]