PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g074360.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 212aa    MW: 24611.8 Da    PI: 7.0986
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g074360.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-06153172120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C++C+k+F+r  n++ H+
  Solyc06g074360.2.1 153 FACNICNKTFNRYNNMQMHM 172
                         78*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.77E-6144176No hitNo description
Gene3DG3DSA:3.30.160.605.3E-6153172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.783153180IPR007087Zinc finger, C2H2
PfamPF128741.5E-4153172No hitNo description
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGIRNMNFHV HQDNMDVCFD QTPNFIEWLK PSSNNSSPSS SSSTIMNTFL KLPQLYNPQD  60
QIQCLPLLSK LSDPKTEKEE EDYQVKEENM EKVRVSLHIG LPDVDETKPF SYNKKEENKE  120
KYSTIINKGC NFNSESRFWI PTPAQILVGP MQFACNICNK TFNRYNNMQM HMWGHGSEYR  180
KGPESLRGTQ PPWQLLSNKK ISRREGFVEE H*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.243560.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g074360.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241317.11e-140zinc finger protein WIP3
SwissprotQ9SGD12e-40ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A3Q7GZU71e-139A0A3Q7GZU7_SOLLC; Uncharacterized protein
STRINGSolyc06g074360.2.11e-157(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.14e-33WIP domain protein 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]