PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g069460.1.1
Common NameTCP6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 279aa    MW: 30895.1 Da    PI: 9.4107
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g069460.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.97.8e-3057131374
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ + k +i++l+ ++ +++s +   +
  Solyc06g069460.1.1  57 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATKDEIDKLPPLQIPPPSLShffS 131
                         79*************************************************************777763222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2658123IPR005333Transcription factor, TCP
PROSITE profilePS5136929.4458116IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNSRKQETGS GVDTNNSKTT STTTATTIPS SSSSRQSSSW GGGFKNPRIV RVSRSFGGKD  60
RHSKVCTVKG LRDRRIRLSV PTAIQLYDLQ DRLGLSQPSK VVDWLIDATK DEIDKLPPLQ  120
IPPPSLSHFF STKDHHNLDF VDTGLFGKDR WIATTNDQES SNHLIFQSSN LGMLNTFSNS  180
WEPNSNLSLG PFGNYQDQYQ QQQNMPLIPS SSHHQQQQLY FCPTSSSTTT LSSLVPPYNS  240
HFHPNSIAPT LQLTTSPVKS SFSLQDHHQH NHKEGSGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1963117155Putative transcription factor PCF6
5zkt_B2e-1963117155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.259090.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g069460.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
BioGRIDSolyc06g069460.1, Solyc05g007420.1, Solyc02g089020.1, Solyc02g089830.1, Solyc06g065190.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963240.0Solanum lycopersicum TCP transcription factor 6 (TCP6) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234568.10.0TCP transcription factor 6
TrEMBLG3BGU60.0G3BGU6_SOLLC; TCP transcription factor 6
STRINGSolyc06g069460.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Parapunova V, et al.
    Identification, cloning and characterization of the tomato TCP transcription factor family.
    BMC Plant Biol., 2014. 14: p. 157
    [PMID:24903607]