PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g069240.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 407aa    MW: 45628.9 Da    PI: 8.6476
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g069240.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.11.3e-371142773134
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........................s 66 
                           kdrhski T++g+RdRR+Rls++ a++fF Lqd LGfdk+skt+eWLl+q+  ai el+                             s
  Solyc06g069240.1.1 114 SNKDRHSKINTARGPRDRRMRLSLDAARKFFRLQDLLGFDKASKTVEWLLTQSDSAIEELVAAkgndaqvaqqtscntpttttgigaicaS 204
                         579************************************************************99*****999999999999999888774 PP

                 TCP  67 sssasec.....eaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                         +s +++c     ++e+ss+ ++++++++++k++ k+  ++++ a    l kesr++arararert++k++ ++
  Solyc06g069240.1.1 205 NSISESCevisgTDETSSNDKNKETAQDEEKKKRKKVVNTARRAVLEPLTKESRNQARARARERTKSKKMSQT 277
                         44445677775333333333333444466666668889999999999****************9998877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.0E-44114275IPR005333Transcription factor, TCP
PROSITE profilePS5136934.024115173IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.49255272IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MYPPSNNNCS PILSSLICQN IPSSPCMQYE HELYFQSFNH DNQYYFQQQQ LVPSIDDLSP  60
HILADSCTEI ITKPSNCNHE LQGMEEGRGE KKGDDDVMSS RISGRISKNN KRSSNKDRHS  120
KINTARGPRD RRMRLSLDAA RKFFRLQDLL GFDKASKTVE WLLTQSDSAI EELVAAKGND  180
AQVAQQTSCN TPTTTTGIGA ICASNSISES CEVISGTDET SSNDKNKETA QDEEKKKRKK  240
VVNTARRAVL EPLTKESRNQ ARARARERTK SKKMSQTGKS KSLANDLNPS GSRRPANKTC  300
EEPGTHEELN FHQEKNTVDD CNFMVNGNWN PFTIFSYHEQ YAGISNETCN FVESYGKARA  360
RNFEADKVPS SFCAGNSKRI KFLLHFVLTR PQQKNVSGLY LLVNVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235239KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g069240.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963260.0Solanum lycopersicum TCP transcription factor 8 (TCP8) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234572.20.0TCP transcription factor BRC1b
TrEMBLA0A3Q7HTP50.0A0A3Q7HTP5_SOLLC; Uncharacterized protein
STRINGSolyc06g069240.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-26TCP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]