PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g068580.1.1
Common NameLOC104648104
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 351aa    MW: 39950.5 Da    PI: 4.5666
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g068580.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.47e-33121402128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.rknratk..sgyWkatgkd 89 
                         ppGfrF Ptdee++++yL + v+g+ +    +i+ vd+y+++P  Lp  v+ + + +yfF+krd+ky +g+ +++r+t+  +gyWk+t k+
  Solyc06g068580.1.1  12 PPGFRFIPTDEEILQYYLFRYVTGNYILP-GIIPLVDLYECDPDYLP-GVNMDGEYTYFFTKRDRKYVNGTkNTSRVTRdgRGYWKSTNKK 100
                         9*************************777.79***************.566788899***********9872566788867899******* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128
                           v++++g++ g k+tL +y  ++p+g    ++W+mhey +
  Solyc06g068580.1.1 101 SIVVAQDGSKLGKKTTLKYY-FKNPEGDdiPAQWIMHEYVI 140
                         *****9**************.45555552379*******75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-379165IPR003441NAC domain
PROSITE profilePS5100538.41111165IPR003441NAC domain
PfamPF023654.6E-2012139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSGEEEWKQQ IPPGFRFIPT DEEILQYYLF RYVTGNYILP GIIPLVDLYE CDPDYLPGVN  60
MDGEYTYFFT KRDRKYVNGT KNTSRVTRDG RGYWKSTNKK SIVVAQDGSK LGKKTTLKYY  120
FKNPEGDDIP AQWIMHEYVI SCKIVKPSIE DEYYEDIAAC RIYKKKPEVK EETLTDPNLL  180
MSDHNNNGEP QLSVKRKFIA SDPPHDTTMS SNYLCDSQAA LILDGMRTTY EVGQTSNTKS  240
IPIEINHTSS TNLTPFEIDQ MSYTKSTLFE IGQTSNTNST PLQGNIVPMG KGVFVDPTDQ  300
TSTNVYQNQS NEGKIEGTNF DLDLDGLHNI LHDSSPPDES FEEYWQSLQI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-261117117171NO APICAL MERISTEM PROTEIN
1ut4_B2e-261117117171NO APICAL MERISTEM PROTEIN
1ut7_A2e-261117117171NO APICAL MERISTEM PROTEIN
1ut7_B2e-261117117171NO APICAL MERISTEM PROTEIN
4dul_A2e-261117117171NAC domain-containing protein 19
4dul_B2e-261117117171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g068580.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322975.10.0NAC domain-containing protein 55-like
TrEMBLK4C8320.0K4C832_SOLLC; Uncharacterized protein
STRINGSolyc06g068580.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1616255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.11e-31NAC domain containing protein 86
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]