PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g068390.1.1
Common NameLOC101258965
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 178aa    MW: 20275.8 Da    PI: 8.936
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g068390.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000345678123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C + F ++  L  H++ H
  Solyc06g068390.1.1 56 FSCNYCYRNFYSSQALGGHQNAH 78
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-65284No hitNo description
PROSITE profilePS5015711.1985683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDSQNQSAQD DKQENNGLIL DLDLSLLCNW ELKPTDDQII KTTNHTCDGE TEHQVFSCNY  60
CYRNFYSSQA LGGHQNAHKR ERTTMAKRKH SMDSIPIMHR PPPAIQAHSM THKPNISSNT  120
FRAPAIPTSL YNTHSAPMWS KRRRDQFPVI GRPERNKFST VVGSQEDLKK LDLSLKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.6610.0cell culture| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g068390.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241683.11e-133zinc finger protein 3
TrEMBLA0A3Q7GWW51e-132A0A3Q7GWW5_SOLLC; Uncharacterized protein
STRINGSolyc06g068390.1.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1593066
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.14e-20C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]