PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g068210.1.1
Common NameLOC101268116
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 743aa    MW: 85035 Da    PI: 5.2077
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g068210.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.44.1e-22134217189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         ++Yn YAke+GF +r+++s ++++++e   + ++C++eg+++ ++ +     ++r+etrtgC a++++++ ++++w+v++++leHnH +
  Solyc06g068210.1.1 134 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAMVRLRLVESNRWRVDEVKLEHNHLF 217
                         69****************************************99888.....8999*******************************77 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-19134217IPR004330FAR1 DNA binding domain
PfamPF105516.1E-25337423IPR018289MULE transposase domain
PROSITE profilePS509669.52623659IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-5631657IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-5634661IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MEEGMGTSEQ LPVGEGSDNE AASEEVFDIT CNGTESDGDQ VLNIEANELG TTAGQILEFE  60
SHEAEKNCEH VLNFESGVPR DNSHRLSEFH SNGLEDPRCG DTAINDCHTG SSLGKSYPPP  120
VVGMEFESYE DAYNYYNCYA KELGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTMKEAN  180
SRRKETRTGC LAMVRLRLVE SNRWRVDEVK LEHNHLFDPE RVQNSKSHKK MDAGVKRKLE  240
PAVDVEVRTI KLYRTPAVET SGEGSSDERA ASSQIDGSTR LKLKEGDTQV IYNFFCRMQL  300
TKPNFFYIMD FDDEGYLKNV FWIDSRSRAA YAYFGDVVVV DTTCLSKKYD IPLLAFFGLN  360
HHKETLLLGC SLLADESFET YVWLLRAWLS CMSGRPPQTI ITDRCKALQN AISEIFPRAN  420
HRLNLSIILD SIVNSVGEVG ESEVFHEVLY NTVYGSLKID EFEVAWEEMA QRFGCGGYGW  480
FQSLYDDRER WAPIYMKDTF LAGISIDQNG EFMCPFFDGF VHKETNLREF FDIYDFVLQK  540
NHQKEVVCDL DSKEFSPVLR TRCNYELQLS KLYTKEIFLK FQEEMDLMSN CSGIAQIHTN  600
GPIITYMVKE RGVQGDMSDA RDVEVTYDKI GVEVRCMCSC FNFRGYLCRH ALSVLNYNGI  660
EEIPNHYILT RWRKDFKRLY APELGSSNID ISNPVQLFDH LHRRAMQVVD EGMVSQHHYM  720
VAWQAFKESL NKVRLAADKR VS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.245470.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g068210.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322661.10.0protein FAR1-RELATED SEQUENCE 8
RefseqXP_010322662.10.0protein FAR1-RELATED SEQUENCE 8
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A3Q7GZW00.0A0A3Q7GZW0_SOLLC; Uncharacterized protein
STRINGSolyc06g068210.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]