PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g066540.1.1
Common NameLOC101252194
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 193aa    MW: 21472.1 Da    PI: 4.7351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g066540.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-181765254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++
  Solyc06g066540.1.1 17 IYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALSIK 65
                        69****998.**********843...6**********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.48E-311676No hitNo description
PfamPF008476.0E-131665IPR001471AP2/ERF domain
PROSITE profilePS5103222.7481774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-301775IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-201775IPR016177DNA-binding domain
SMARTSM003802.5E-321780IPR001471AP2/ERF domain
PRINTSPR003671.3E-101829IPR001471AP2/ERF domain
PRINTSPR003671.3E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSKRIRESDE KGNKHPIYRG VRMRSWGKWV SEIREPRKKS RIWLGTYPTA EMAARAHDVA  60
ALSIKKDSSI LNFPHLIDSL PRPISLSPRD VQAAAAEAAA MEDLNYVSST SSVSSIDKIT  120
SASEELGEII ELPSLDGSFE SEESKTELKI SDSVDGWLYP PWWASDGDFD GYLFEQDAVG  180
NSLILSNFEM MK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-191275973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.3490.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g066540.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241746.11e-137dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-58DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3Q7GXB51e-136A0A3Q7GXB5_SOLLC; Uncharacterized protein
STRINGSolyc06g066540.1.11e-137(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-54ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]