PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g066390.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 406aa    MW: 46380 Da    PI: 9.6821
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g066390.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.7e-1581140155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a+ k++g
  Solyc06g066390.1.1  81 SRFRGVSRHRWTGRYEAHLWDkGSWNVtqkKKgKQVYLGAYDEEESAARAYDLAAIKYWG 140
                         789******************888855555447*************************98 PP

2AP252.31.4e-16183234155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Solyc06g066390.1.1 183 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 234
                         89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-1681150IPR016177DNA-binding domain
PfamPF008476.5E-1281140IPR001471AP2/ERF domain
CDDcd000188.22E-2081150No hitNo description
SMARTSM003801.2E-2482154IPR001471AP2/ERF domain
PROSITE profilePS5103219.41482148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-1582149IPR001471AP2/ERF domain
PRINTSPR003673.0E-58394IPR001471AP2/ERF domain
PfamPF008475.1E-12183234IPR001471AP2/ERF domain
CDDcd000181.72E-25183244No hitNo description
SuperFamilySSF541716.54E-18183244IPR016177DNA-binding domain
SMARTSM003802.7E-26184248IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18184243IPR001471AP2/ERF domain
PROSITE profilePS5103218.953184242IPR001471AP2/ERF domain
PRINTSPR003673.0E-5224244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDLNKDSYLV KSEMSSPGKR SMSMVDYGIP ETTKRVKRRR RSPPAVGVVN DNIGQQAEQQ  60
KMDSSKVDQN IAHTPTVKRS SRFRGVSRHR WTGRYEAHLW DKGSWNVTQK KKGKQVYLGA  120
YDEEESAARA YDLAAIKYWG TSTFINFPIS DYEKEIEIMQ TVTKEEYLAS LRRRSSGFAR  180
GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AARAYDIAAI EYRGINAVTN  240
FDLSTYIRWL KPGVNTQMAF QELRSENQAI QTNTNDIINP INDPQFTFGS NYFSTTRETL  300
PPIPQSQEPI ERKMPLSPCN KPPSPTALSL LLRSSMYREL VEKNSTTIAN EKDDPNMKNK  360
QQVNTEDEFV FYRSDKLPAL ESMDEGTTSS HLGDRAGQSF WDVMP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g066390.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365981.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A3Q7GWA60.0A0A3Q7GWA6_SOLLC; Uncharacterized protein
STRINGSolyc06g066390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34402145
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-94AP2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]