PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g065820.2.1
Common NameERF1, ERF3-like
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 205aa    MW: 23243.7 Da    PI: 9.1183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g065820.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-18755254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                        +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Solyc06g065820.2.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                        69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.25E-36666No hitNo description
Gene3DG3DSA:3.30.730.102.2E-34764IPR001471AP2/ERF domain
SMARTSM003804.1E-40770IPR001471AP2/ERF domain
PROSITE profilePS5103221.14764IPR001471AP2/ERF domain
PfamPF008472.4E-11756IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-21766IPR016177DNA-binding domain
PRINTSPR003673.4E-11819IPR001471AP2/ERF domain
PRINTSPR003673.4E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MARAQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFPYNPNMP QTSSSKLLST TLTAKLHKCY MASLQMTKTS PQGQKLAKNA TNVQESVINS  120
YKMKQQMLVP KPSVLLTHHD HHEEAKVVNL GVGVIRKVED QVLEGIPQFV KPLEDDHIEQ  180
MIEELLDYGS IELCSNVVPS HQIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-18664160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.36920.0callus| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g065820.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0776260.0Lycopersicon esculentum ethylene response factor 1 (ERF1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234848.11e-154ethylene response factor H.1
SwissprotQ94AW56e-73ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLQ8S9H41e-152Q8S9H4_SOLLC; Ethylene response factor 1
STRINGSolyc06g065820.2.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-53ERF family protein
Publications ? help Back to Top
  1. Hongxing Z, et al.
    Cloning and DNA-binding properties of ethylene response factor, LeERF1 and LeERF2, in tomato.
    Biotechnol. Lett., 2005. 27(6): p. 423-8
    [PMID:15834808]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]