PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g062670.2.1
Common NameLOC101244006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 504aa    MW: 56295.1 Da    PI: 8.5913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g062670.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-057092123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Solyc06g062670.2.1 70 FFCEICNKGFQRDQNLQLHRRGH 92
                        67*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.33E-66992No hitNo description
Gene3DG3DSA:3.30.160.604.8E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0447092IPR015880Zinc finger, C2H2-like
PfamPF121712.6E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.727092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355100112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.33E-6142167No hitNo description
SMARTSM00355150147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MSIVTCEEAA ASLSSSSNMN NDTNGAFCYP PQHQLVTQQI KKKRNQPGNP DPEAEVIALS  60
PKTLVATNRF FCEICNKGFQ RDQNLQLHRR GHNLPWKLKK RENKEVVRKK VYICPESSCV  120
HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DCKAHFKTCG TREYKCECGT  180
IFSRRDSFIT HRAFCETLAM ESARSVINER NPTIFSPQMN LQFQQPHYFN SHEQIQAATF  240
PMKKEQQSSD FRHIEIPPWL ITTNSQPFQL GAINPSPSVP LSNFSSSSIF PATTRLDQQY  300
SQSSHKDLNL HHQNPNPNLR GPTLGYDSMG ESGVVSPVHI SATALLQKAA QFGATISNKA  360
SAVTATAAYT GTAKIPHNTH VSVTSTDSAT KQTQQKLSSR EDLTTITGPA NNISGIMTSF  420
SNGFDGSTMF EDAILFGGFN NLNSKKENED EDQQLYFNGS MNEEDHILTK DFLGLKPLSH  480
TDDIFNIAAL VNTEFKNHKT WQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-30143204364Zinc finger protein JACKDAW
5b3h_F3e-30143204364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196109KLKKRENKEVVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g062670.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308268.10.0zinc finger family protein
RefseqNP_001308269.10.0zinc finger family protein
TrEMBLA0A3Q7GUL60.0A0A3Q7GUL6_SOLLC; Uncharacterized protein
STRINGSolyc06g062670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.13e-99indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]