PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g051840.1.1
Common NameLOC101244085
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 351aa    MW: 39354.6 Da    PI: 4.5954
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g051840.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19124173255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Solyc06g051840.1.1 124 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 173
                         89*******.**********82....35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-29123180IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-21124180IPR016177DNA-binding domain
CDDcd000182.95E-33124180No hitNo description
SMARTSM003809.2E-38124187IPR001471AP2/ERF domain
PfamPF008479.2E-13124173IPR001471AP2/ERF domain
PROSITE profilePS5103223.657124181IPR001471AP2/ERF domain
PRINTSPR003673.8E-10125136IPR001471AP2/ERF domain
PRINTSPR003673.8E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDHHSSLCPI KYTEHKRTIR KVTKPSVIKP KKVSDVRKSS EYNPRTVRIC VTDPDATDSS  60
SDEDELFGRK RVKRYISEIS IESPSVNDVK TLSSGNGKKR VAEGSQAKQK ALKGKEVADK  120
TVRKFRGVRQ RPWGKWAAEI RDPARRVRLW LGTYDTAEEA AMVYDNAAIK LRGPDALTNF  180
ITPPIKEKPE VNVASNSGYE SGDESHNLSS PTSVLRFRSS ESSEEAEPGL EDIKENCTVL  240
VEEEPNSEHL ECQGETLTVI PDYSNDYLPT DVSFLDDYFN FADAEQSLFN DTTSFTNDDL  300
FSSWDFTNDS VLDPEICKFD DSFLDLGALE VDNYFKDIGD FSSVDVLMAL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21123180159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g051840.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241128.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLA0A3Q7HNY30.0A0A3Q7HNY3_SOLLC; Uncharacterized protein
STRINGSolyc06g051840.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-73cytokinin response factor 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]