PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g051060.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 255aa    MW: 28895.9 Da    PI: 9.8076
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g051060.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1031.8e-3270123255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWtpeLH rFv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+
  Solyc06g051060.2.1  70 PRLRWTPELHLRFVHAVERLGGQDRATPKLVLQFMNIKGLSIAHVKSHLQMYRS 123
                         8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-3066124IPR009057Homeodomain-like
PROSITE profilePS5129412.91766126IPR017930Myb domain
SuperFamilySSF466892.69E-1667125IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-2370125IPR006447Myb domain, plants
PfamPF002493.6E-1071122IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKGGSSSTEE DSKSNPKQQI EFEEEEDVET EVNSKAQGTT RSSSSNSTVE ENGKKPNSAS  60
VRQYVRSKTP RLRWTPELHL RFVHAVERLG GQDRATPKLV LQFMNIKGLS IAHVKSHLQM  120
YRSKKTDDPN QISTDGRFLL ENGDHHIFNL TQLSRLHGFK QTSSSSLRYD TALWNRQANS  180
LYNPYNMNIG GGSSISTRHG FASHSSHEQL FPWNKSIEIE KNQNRHNQRF WPPITQIGTS  240
SEIIRARNDD TNPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1771125458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1771125458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-1771125357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1771125357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1771125357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1771125357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1771125458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1771125458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1771125458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1771125458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1771125458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1771125458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g051060.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322168.11e-180putative two-component response regulator ARR21 isoform X2
TrEMBLA0A3Q7HNH91e-158A0A3Q7HNH9_SOLLC; Uncharacterized protein
STRINGSolyc06g051060.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85732129
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-48G2-like family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]