PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g050520.1.1
Common NameDREB1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 301aa    MW: 33301.4 Da    PI: 4.6575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g050520.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-1980130155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr++  +g+WvAeIr+p+    r  r +lg+fgta eAa a++ a+++++g
  Solyc06g050520.1.1  80 CKYRGVRQRI-WGKWVAEIREPK----RgSRLWLGTFGTAIEAALAYDDAARAMYG 130
                         79*****998.**********83....46************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-3180139No hitNo description
PfamPF008475.7E-1480130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2981139IPR001471AP2/ERF domain
SMARTSM003807.2E-3681144IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1981138IPR016177DNA-binding domain
PROSITE profilePS5103220.94381138IPR001471AP2/ERF domain
PRINTSPR003672.8E-98293IPR001471AP2/ERF domain
PRINTSPR003672.8E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAIMDEAANM VCVPLDYSRK RKSRSRRDRT KNVEETLAKW KEYNEKLDNE GKGKPVRKVP  60
AKGSKKGCMR GKGGPENWRC KYRGVRQRIW GKWVAEIREP KRGSRLWLGT FGTAIEAALA  120
YDDAARAMYG PCARLNLPNY ACDSVSWATT SASASASDCT VASGFGEVCP VDGALHEADT  180
PLSSVKDEGT AMDIVEPTSI DEDTLKSGWD CLDKLNMDEM FDVDELLAML DSTPVFTKDY  240
NSDGKHNNMV SDSQCQEPNA VVDPMTVDYG FDFLKPGRQE DLNFSSDDLA FIDLDSELVV  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1682138360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKS
22027RKSRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g050520.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5000110.0Lycopersicon esculentum dehydration responsive element binding protein (DREB1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234689.10.0dehydration responsive element binding 1
TrEMBLQ8GZF20.0Q8GZF2_SOLLC; Dehydration responsive element binding protein
STRINGSolyc06g050520.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-41ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]