PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g034140.1.1
Common NameLOC101248980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 446aa    MW: 49929.2 Da    PI: 6.0454
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g034140.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.4e-1584174199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k ++ps+v+   +l +pk+f++ h ++k  +  ++l de+ ++   k+ ++k++    l++GW++F  a++L egD++vF+l++ s+f 
  Solyc06g034140.1.1  84 FVKYMLPSHVSGGFWLGFPKRFCDCH-LPK-HDAIVVLVDENDEESPTKYLIDKNG----LSGGWRGFSIAHNLLEGDVLVFQLIQPSKF- 167
                         8999*******************655.554.4568***************889998....*************************99999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v ++r+
  Solyc06g034140.1.1 168 -KVYIVRE 174
                         .8888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.63E-2479175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-2080176IPR015300DNA-binding pseudobarrel domain
CDDcd100172.62E-2582173No hitNo description
PROSITE profilePS5086311.19484175IPR003340B3 DNA binding domain
PfamPF023621.2E-1384174IPR003340B3 DNA binding domain
SMARTSM010192.0E-2284175IPR003340B3 DNA binding domain
PfamPF052662.9E-7323431IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAISSLYSSK KSPALSSSKK KAQQIKKKTL APTKTNKVVN GGTKKVQICL EKKTLKHSSV  60
DVNSSAMLRA AEVQANLPCQ FPSFVKYMLP SHVSGGFWLG FPKRFCDCHL PKHDAIVVLV  120
DENDEESPTK YLIDKNGLSG GWRGFSIAHN LLEGDVLVFQ LIQPSKFKVY IVRENCLTEI  180
DGAITLLNLD FRARPIKSDH DEEIKIFEAK EEKYLEPPVL DINQDDKIEE PMLLPNSDHD  240
PIADQCGNDS DNGSDVLEGI RFSESRVEFK DVKDYSGFNI IVDGLTIDSE VPALHIRTKY  300
YDLCRAQNSF LHDHLLAGLN VKLAAGMITE TVNIADAIRA CESWTPREYL DTWDNTLKGF  360
ECLGMNVGFL RARISKLDSL SSESKDVLES KKVELAEAKE EMRIIEEKVL KVKQVMKNVE  420
SEIEALTKKD ANFELKFKAL AASPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g034140.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2461571e-141Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-13j9 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240808.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A3Q7GU180.0A0A3Q7GU18_SOLLC; Uncharacterized protein
STRINGSolyc06g034140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-42B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]