PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g016750.2.1
Common NameLOC101265135
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 447aa    MW: 51510.8 Da    PI: 8.8585
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g016750.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC24.94.4e-083424301199
               NF-YC  11 ekatdfknhelPlarikkilkade.dvkmisaeaPvllskacelfileltlrswlhaeenkrr.tlkksdiaaavtrtdifdflvdivprd 99 
                         +++++ +  ++P  r+++i+k ++ +++m+  ea  l+ ka e f le+  r    +   +r+  +  + ++++v++   fdfl d +p++
  Solyc06g016750.2.1 342 DEKSESALYQFPHNRVHRIIKNENtEIRML-HEATFLVNKATEKF-LEIFCREAYSCSFLDRKsYVGYNHLSSVVSKRPRFDFLSDFIPQK 430
                         4555666789***********876266665.79***********9.68888877666666665168899*******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.0E-13333429IPR009072Histone-fold
PfamPF008083.5E-8351414IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.7E-16352429IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPKKSNGNSD NHDRDEPEDF VIPSSSAESQ DADETDEESD DVQNVHKEYV SDTDKEDEEE  60
EEEEKVESSK VGNTNSRGRE EDLEVQKKVY RRKGKKIVDG CGLSESENLK IYTRKKKMIE  120
KEKEVEEKER NVGAKIATSK NDYSEKNMNA KKEDKVNEGK TAKNNGDSSR GGKNEKRNNK  180
DERREVEGET KLAKKGKSNG GSSHGSVIKK EENKKKKRTD ERERERERER ERERERERQS  240
AKKAKINGDS SQLKKEEKNM KKTQNKKEGD EEAEENLVKK SNSNGVASPA KKEKMKREKE  300
KKGKTNNGKV KDEAISNGTT KKNEEKKLKA KRKREDDEEE EDEKSESALY QFPHNRVHRI  360
IKNENTEIRM LHEATFLVNK ATEKFLEIFC REAYSCSFLD RKSYVGYNHL SSVVSKRPRF  420
DFLSDFIPQK VRAEDALAEI PKSAET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227237RERERERERER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240677.10.0PREDICTED: myb-like protein X isoform X1
TrEMBLK4C4A20.0K4C4A2_SOLLC; Uncharacterized protein
STRINGSolyc06g016750.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93041415
Representative plantOGRP86701112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-26nuclear factor Y, subunit C10
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]