PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g008610.2.1
Common NameWRKYIId
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 349aa    MW: 39052.1 Da    PI: 10.0788
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g008610.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-31281339259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ed +++++tYegeHnh+
  Solyc06g008610.2.1 281 SDEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDASMLIVTYEGEHNHP 339
                         69************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-17233278IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.2E-34269340IPR003657WRKY domain
PROSITE profilePS5081130.4275341IPR003657WRKY domain
SuperFamilySSF1182903.92E-27278340IPR003657WRKY domain
SMARTSM007743.7E-39280340IPR003657WRKY domain
PfamPF031062.5E-27282339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEIEEVNKA AVENCHRVIS LLSSRTHDQN SYTNLVRETG EAVHKFKKVV TLLNSTLGHA  60
RVRKSNKFMT PLPHNILVEN PNCKIDDQAK ALRLLPIDTP ENRVLEMGAN VKCNLTLGSP  120
SLELSSNSRN PLNFGQQTPF PSYNYLQQQQ QQQQQRRFLL QQQQQLKQPA EMMYRRSNSG  180
VSLNFDSSTC TPTMSSTRSF ISSLSVDGSV ANGNSFHLIG ASHSADQSSF QHKRKCSGRG  240
DEGSGKCGSS GRCHCSKKRK HRVKRSIKIP AVSNKLADIP SDEYSWRKYG QKPIKGSPHP  300
RGYYKCSSMR GCPARKHVER CLEDASMLIV TYEGEHNHPR LPSQLANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22268342275WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.39610.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1570645e-90Lycopersicon esculentum WRKY transcription factor IId-5 mRNA, partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240511.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-116WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLK4C3P10.0K4C3P1_SOLLC; Uncharacterized protein
STRINGSolyc06g008610.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-116WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]