PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g007530.2.1
Common NameLOC101249925
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 294aa    MW: 33722.4 Da    PI: 9.7201
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g007530.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.6e-17141231199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k++++s+v +  +l lp +f+++h  + ++++++ l de+g ++e  +   +k+ +  l++GW+ F+ +++L++gD +vF+l++ ++f 
  Solyc06g007530.2.1 141 FIKTMVRSHVYSCFWLGLPTRFCQDHL-P-KSTVDVLLVDEEGLEYEALF--IGKRTG--LSGGWRAFALDHKLDDGDALVFELVEPTKF- 224
                         89*********************9995.3.3789****************..555544..***********************9876666. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v ++r+
  Solyc06g007530.2.1 225 -KVYIVRA 231
                         .8888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-22133234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-24135237IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-24139230No hitNo description
SMARTSM010197.4E-23141232IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239141232IPR003340B3 DNA binding domain
PfamPF023622.2E-15141231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MANDKTNSYE ELRRQRVLDN KKRFEDLGIL NISKNLSDIT KSEKKSDYKT ELRRVRQKAK  60
DVYLSEPRRS ARARNPVPTY RDEIDIELPS LRKRSKFSSS WASYLARPLE EVKVASYEEK  120
VLALKCAEKL QSNLQSDKPF FIKTMVRSHV YSCFWLGLPT RFCQDHLPKS TVDVLLVDEE  180
GLEYEALFIG KRTGLSGGWR AFALDHKLDD GDALVFELVE PTKFKVYIVR ASQCSSEVDK  240
SEAEKEESEA EETPKSETKK KKKSSNKPEV PTIAKEEVSV VVTSATRRST RRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g007530.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139570.0Lycopersicon esculentum clone 132981R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240433.10.0putative B3 domain-containing protein At5g58280
RefseqXP_019069951.10.0putative B3 domain-containing protein At5g58280
SwissprotQ9FHB24e-71Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLK4C3D40.0K4C3D4_SOLLC; Uncharacterized protein
STRINGSolyc06g007530.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125102022
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-72B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]