PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g005130.2.1
Common NameLOC101252493
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 309aa    MW: 34620.3 Da    PI: 6.7505
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g005130.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1252.4e-393898262
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        +++ +kcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ss
  Solyc06g005130.2.1 38 QDEVQKCPRCDSSNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKQRSS 98
                        57889****************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-272791IPR003851Zinc finger, Dof-type
PfamPF027013.0E-334096IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8634296IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104480IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDMDSSNAQN YHQEMSSQTL ESMLACTKPQ QEKKPRPQDE VQKCPRCDSS NTKFCYYNNY  60
SLTQPRYFCK SCRRYWTKGG TLRNVPVGGG CRKKQRSSSK RSSPDNQSLM TTTTYPNNQI  120
SPLTQFSYDP NDLSLAFSRL QNQESGQLVC PKLQRTVRTE SIFSDSLYLT NFGNSVCHDV  180
FENRDMCTSS SEAFSRAGFL DTLSDGLLDA SNGFLHHNLY YYGSNGNNGN NMGHVESASG  240
EMITNFDQEV RSGALKEEIM CSDNKILLGY PWQINGDGNV ADFEYSNRQN WNGLGVPSGH  300
GLLNSPLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g005130.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240603.10.0dof zinc finger protein DOF2.1-like
TrEMBLA0A3Q7GR880.0A0A3Q7GR88_SOLLC; Uncharacterized protein
STRINGSolyc06g005130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.12e-37Dof family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]