PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g054030.2.1
Common NameLOC101268284
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 382aa    MW: 43992 Da    PI: 8.5223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g054030.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.61.2e-065880123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C+ sF r  nL+ H r+H
  Solyc05g054030.2.1 58 YVCEICNLSFQREQNLQMHRRRH 80
                        9*********************9 PP

2zf-C2H216.52.4e-05142163223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++C+k +  +s++k Hi+t+
  Solyc05g054030.2.1 142 ICQKCNKGYAVQSDYKAHIKTC 163
                         7*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.2E-65781IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.78E-75780No hitNo description
PROSITE profilePS5015710.6995880IPR007087Zinc finger, C2H2
SMARTSM003559.9E-45880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SuperFamilySSF576678.78E-7136161No hitNo description
SMARTSM0035552141168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MLTSNSFLFG APSNYSDPFS SPENGFIIKR KRRPAGTPDP DAQVVYLTAE MLMESDRYVC  60
EICNLSFQRE QNLQMHRRRH KVPWKLKKKE EEKNEMDQVI KKRVYVCPEP SCVHHDPCHA  120
LGDLVGIKKH FRRKRSNYKQ WICQKCNKGY AVQSDYKAHI KTCGTRGHSC DCGRVFSRVE  180
TFIEHQDSCK PQSTTTKECH DMQIPKPIFL PTTTTHIPPH DQYSKILPNL DLELFTSPNY  240
FNQNTHNFSS FVDQSDHHHH NNNYIVQNND IEVKEIIEEA TTQVTRLKSE ANEILKIAME  300
EKAMAIEKRQ EAKCLIELAN LEMAKAMEIR QSVCASSSSS SHVMKIIKCS SCNNKQFQSV  360
SSSKDATLTN NYYLSSSIYR R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-16139189555Zinc finger protein JACKDAW
5b3h_F2e-16139189555Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269|PubMed:24039602}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g054030.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240203.10.0protein SHOOT GRAVITROPISM 5-like
SwissprotQ9C9X74e-98IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A3Q7GPS40.0A0A3Q7GPS4_SOLLC; Uncharacterized protein
STRINGSolyc05g054030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.16e-99C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  3. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]