PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g052610.2.1
Common NameLOC101257376
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 244aa    MW: 28526.1 Da    PI: 7.5919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g052610.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-13123167347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ +++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
  Solyc05g052610.2.1 123 PWTEEEHRRFLMGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 167
                         8*****************************789***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.2452175IPR017884SANT domain
SMARTSM007171.0E-82274IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-112479IPR009057Homeodomain-like
PfamPF002491.5E-52568IPR001005SANT/Myb domain
CDDcd001671.19E-62572No hitNo description
PROSITE profilePS5129420.218116172IPR017930Myb domain
SuperFamilySSF466891.65E-16118171IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-18119171IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.5E-12120167IPR009057Homeodomain-like
SMARTSM007171.2E-11120170IPR001005SANT/Myb domain
PfamPF002492.0E-11123167IPR001005SANT/Myb domain
CDDcd001678.33E-9123167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
METLYPTCFV PNSNWIMQQS KSNTEWTKEE NKRFESALAI YDETTPNRWF KVAEIIPGKS  60
VLDVIMQYKE LVADVSNIEA GLLPNTRRGY TSSFALEFVD HRNIQTFNKR GKSYDHERKK  120
GVPWTEEEHR RFLMGLEKYG KGDWRNISRN FVISKTPTQV ASHAQKYYLR QLSREKERKR  180
PSIHDITTVH LTNDEFLNNN NNDDKKSMCE ERLYMSSTST TDLLIGCWNN SIDEDLMAFG  240
QFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.152290.0callus| flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g052610.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4235490.0Lycopersicon esculentum coronatine-insensitive 1 (Coi1) gene, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239940.10.0transcription factor DIVARICATA
RefseqXP_004239941.10.0transcription factor DIVARICATA
RefseqXP_025887035.10.0transcription factor DIVARICATA
SwissprotQ8S9H73e-79DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3Q7GP040.0A0A3Q7GP04_SOLLC; Uncharacterized protein
STRINGSolyc05g052610.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.15e-77Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]