PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g052050.1.1
Common NameLOC544041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 235aa    MW: 26089.5 Da    PI: 8.7966
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g052050.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-20105155255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g
  Solyc05g052050.1.1 105 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAAIAYDKAAYRMRG 155
                         7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-32104164IPR001471AP2/ERF domain
SMARTSM003806.2E-37105169IPR001471AP2/ERF domain
PROSITE profilePS5103223.947105163IPR001471AP2/ERF domain
CDDcd000182.68E-31105164No hitNo description
PfamPF008476.4E-14105155IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-23105165IPR016177DNA-binding domain
PRINTSPR003676.7E-11106117IPR001471AP2/ERF domain
PRINTSPR003676.7E-11129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDQQLPPTNF PVDFPVYRRN SSFSRLIPCL TEKWGDLPLK VDDSEDMVIY GLLKDALSVG  60
WSPFNFTAGE VKSEPREEIE SSLEFSPSPA ETTAAPAAET PKGRHYRGVR QRPWGKFAAE  120
IRDPAKNGAR VWLGTYETAE EAAIAYDKAA YRMRGSKAHL NFPHRIGLNE PEPVRVTAKR  180
RASPEPASSS GNGSMKRRRK AVQKCDGEMA SRSSVMQVEC QIEQLTGVHQ LLVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-36102170270ATERF1
3gcc_A9e-36102170270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178199KRRASPEPASSSGNGSMKRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.35730.0callus| flower| fruit| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Highly expressed in cell culture, especially during the exponential phase. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Function -- GeneRIF ? help Back to Top
  1. The opposing patterns of regulation of mRNA accumulation are consistent with the activator function of Pti4 and a repressor function for LeERF3b in ethylene responses.
    [PMID: 17570560]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g052050.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2122750.0Solanum lycopersicum chromosome 5 clone C05SLm0093K24, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334005.11e-172DNA-binding protein Pti4
SwissprotQ404761e-125ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLA0A3Q7GNQ81e-174A0A3Q7GNQ8_SOLLC; Uncharacterized protein
STRINGSolyc05g052050.1.11e-174(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-54ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Chen G,Hu Z,Grierson D
    Differential regulation of tomato ethylene responsive factor LeERF3b, a putative repressor, and the activator Pti4 in ripening mutants and in response to environmental stresses.
    J. Plant Physiol., 2008. 165(6): p. 662-70
    [PMID:17570560]
  3. Zhou J,Tang X,Martin GB
    The Pto kinase conferring resistance to tomato bacterial speck disease interacts with proteins that bind a cis-element of pathogenesis-related genes.
    EMBO J., 1997. 16(11): p. 3207-18
    [PMID:9214637]