PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g052030.1.1
Common NameERF4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 202aa    MW: 22599.1 Da    PI: 8.2029
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g052030.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-18118168255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+++AeIrdps   k  r++lg+f+t  +Aa+a++ a+ k++g
  Solyc05g052030.1.1 118 NYRGVRRRP-WGKFAAEIRDPSR--KGSRIWLGTFDTDIDAARAYDCAAFKMRG 168
                         59*******.**********854..34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.36E-31117176No hitNo description
PROSITE profilePS5103224.579118176IPR001471AP2/ERF domain
PfamPF008472.8E-13118168IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23118177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-32118177IPR001471AP2/ERF domain
SMARTSM003806.6E-37118182IPR001471AP2/ERF domain
PRINTSPR003674.5E-13119130IPR001471AP2/ERF domain
PRINTSPR003674.5E-13158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTKQDEGLTL ELIRQHLLED FTTTESFIDS LNSCFSDHIS SSDDISPVFT SVKTEPSTSN  60
SLSDSPNSSY PNEPNSPISR YFNLRSDFPE FKIDSDTILS PVFDSSAGSN EDNNKKKNYR  120
GVRRRPWGKF AAEIRDPSRK GSRIWLGTFD TDIDAARAYD CAAFKMRGRK AILNFPLDAG  180
KSGAPANVGR KRRRENKMEL V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-28115177264ATERF1
3gcc_A2e-28115177264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.41390.0cell culture| flower| leaf
Function -- GeneRIF ? help Back to Top
  1. Silencing SlERF4 reduces ethylene levels and increases susceptibility to Xanthomonas. [ERF4]
    [PMID: 23414755]
  2. Sl-ERF.B3 is a regulator involved in the regulatory network controlling the fruit ripening process. [ERF.B3]
    [PMID: 24645853]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g052030.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1923700.0Lycopersicon esculentum ethylene response factor 4 (ERF4) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234313.11e-146ethylene response factor 4
TrEMBLQ84XB01e-145Q84XB0_SOLLC; Ethylene response factor 4
STRINGSolyc05g052030.1.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.13e-46ERF family protein
Publications ? help Back to Top
  1. Tournier B, et al.
    New members of the tomato ERF family show specific expression pattern and diverse DNA-binding capacity to the GCC box element.
    FEBS Lett., 2003. 550(1-3): p. 149-54
    [PMID:12935902]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Kim JG,Stork W,Mudgett MB
    Xanthomonas type III effector XopD desumoylates tomato transcription factor SlERF4 to suppress ethylene responses and promote pathogen growth.
    Cell Host Microbe, 2013. 13(2): p. 143-54
    [PMID:23414755]
  4. Liu M, et al.
    The chimeric repressor version of an Ethylene Response Factor (ERF) family member, Sl-ERF.B3, shows contrasting effects on tomato fruit ripening.
    New Phytol., 2014. 203(1): p. 206-18
    [PMID:24645853]