PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g050830.1.1
Common NameLOC101243711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 254aa    MW: 28692.9 Da    PI: 5.4014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g050830.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-1876125255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a+++++g
  Solyc05g050830.1.1  76 TYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAQMAARAHDVAALAIKG 125
                         69****888.**********854...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-2176134IPR016177DNA-binding domain
PROSITE profilePS5103223.01176133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3176134IPR001471AP2/ERF domain
PfamPF008472.3E-1276125IPR001471AP2/ERF domain
SMARTSM003807.1E-3676139IPR001471AP2/ERF domain
CDDcd000182.97E-3377135No hitNo description
PRINTSPR003673.1E-107788IPR001471AP2/ERF domain
PRINTSPR003673.1E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKNQEEIINL KNRHDFISNG LSFPSNIATS PSSSSSSSSF SSNNALVSKK CQSSKKIEEE  60
KKKKKINNDD EDKHPTYRGV RKRSWGKWVS EIREPKKKSR IWLGTYPTAQ MAARAHDVAA  120
LAIKGCSAHL NFPHLVDQYP HPASTCHKDI QAAAAKAAAI PFPEEDEEEE DQIESDQVEL  180
RNCHPSTNLF LENAKESLNS PSREDDDTFF DLPDLSIDVV DQTNSYWCTM STWQQLIGAD  240
TMVYRLDEPF LWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17741341273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.202860.0floral bud| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g050830.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240059.10.0ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ71e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLM1AA091e-129M1AA09_SOLTU; Uncharacterized protein
STRINGSolyc05g050830.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-43ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]