PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g050170.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 186aa    MW: 21158.1 Da    PI: 6.0749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g050170.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000521840223
                        EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                         C+ C+++F + s++++Hi+  H
  Solyc05g050170.1.1 18 FCTVCNEMFHTYSEFVNHIQItH 40
                        6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002801940IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MHNANFSPFS GPSPILHFCT VCNEMFHTYS EFVNHIQITH PLSSEQDIIL HSSVYASVTF  60
LPGNPLSTQP AAPRNVRPER NNNIVIMPTP SSNLNHPMIS RDRALPIDRQ LMARRNWFVP  120
IRRGTTPIMD REQMEKRNMV ESSREAIADR TIPLIDQLDV PISSNANELI NIDEEHIDLD  180
LELRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g050170.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9147572e-81S.lycopersicum DNA sequence from clone LE_HBa-34P15, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7GKE61e-132A0A3Q7GKE6_SOLLC; Uncharacterized protein
STRINGSolyc05g050170.1.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1456822
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]