PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g047460.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 1098aa    MW: 120897 Da    PI: 6.3769
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g047460.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.5e-20130231199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++ yr++++r++lt+GW+  v+ ++L +gD+v+F +d
  Solyc05g047460.2.1 130 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNIWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDSVLFIRD 219
                         99*****************************9777766.49************************************************65 PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++f  +++++++
  Solyc05g047460.2.1 220 EKHQF--LLGIRKA 231
                         54555..9998875 PP

2Auxin_resp118.17.3e-39256339183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPra++seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Solyc05g047460.2.1 256 AAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYsSQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 339
                         79*******************************99879********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-41121259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-38121245IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-17129230No hitNo description
PfamPF023623.0E-17130231IPR003340B3 DNA binding domain
SMARTSM010194.4E-21130232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138130232IPR003340B3 DNA binding domain
PfamPF065073.1E-34256339IPR010525Auxin response factor
PROSITE profilePS5174527.7489851069IPR000270PB1 domain
PfamPF023091.5E-69871070IPR033389AUX/IAA domain
SuperFamilySSF542772.65E-610031063No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1098 aa     Download sequence    Send to blast
MKTPGNGAGG GNVNPAEGEK KNLNPELWQA CAGPLVNLPV AGTHVVYFPQ GHSEQVAASI  60
KKDVEAQIPN YPNLPAKLIC LLHNVTLHAD PETDEVYAQM TLQPVPSFDK EALLRSDLSM  120
KANKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSLQPPAQEL VARDLHDNIW  180
TFRHVYRGQP KRHLLTTGWS LVVSGKRLFA GDSVLFIRDE KHQFLLGIRK ANRQPTNLSS  240
SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRAGPSEFV IPLAKYYKAT YSSQISLGMR  300
FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESTAGER INRVSIWEIE  360
PITAPFLICS SPFFSSKRPR QPGMPDGDYS DMDGMFKRTM PWLGDDFGMA DPQGLPGLSL  420
IQWMNMQKNP SLANPMIPNY MNSLSGSALQ NLAGADLSRQ LGMAAPQFQQ QQQMQHNLQF  480
NNAHRPNQQL DQLQKLPAAA LNSLDSIMQS QQQLSDVSQQ PRQNLTTQSL PTTQVHTQHI  540
QAQSLGQSQN VLPPQQSVQN QNQLQRNLPQ SLSQQHPQQQ ILGQTQQQSF MSSQAPDPVN  600
QQQHFSDNQA QLQMLQKLHQ QQKSLLAQQS GLQQPSQLGS IQDHQKQLMD ASQNFSRSLA  660
TNQMLDASQT TSTSLPHSQV VQQQMTRINS PSNLRFSQPT QQPKLQQQQS GNLSDLSGPV  720
NYPLPRTSYQ LSANGSNLTG TAGGGQSVVI DDVPSWSTSV STNNCHSVVQ PNMNGRITGA  780
RDEMTHCSGP LEVMSANNNL QPKSDVKPSV NVVSKSQNHG FLAPQTLNTS GIQFDYLDSS  840
SSATSACLSQ NDVQLQQTAT DPLSGSSQPL IFRDSPDGGE VQGDPRNNVA FGAANMENNQ  900
LGLPMIPDPL ITKSSMGSRK DFSDNLSSGG GMLSSYENPK EAQPELLASM ASDYVTFNSI  960
DSTINDGSFM DRGAWEPPPQ LPRLRTYTKV YKRGAVGRSI DIARYSGYEE LKLDLARRFG  1020
IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD PWEEFVSCVR CIKILSPQEV QQMSLDGDFG  1080
GSVLQNQDCS SSDAGDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651936047388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.256100.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g047460.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651300.0Solanum lycopersicum auxin response factor 19-1 (ARF19-1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321285.10.0auxin response factor 19-1 isoform X1
TrEMBLA0A3Q7GL620.0A0A3Q7GL62_SOLLC; Auxin response factor
STRINGSolyc05g047460.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Wu J, et al.
    Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum.
    Plant Cell Rep., 2011. 30(11): p. 2059-73
    [PMID:21735233]