PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g032780.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 213aa    MW: 24417.8 Da    PI: 5.0558
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g032780.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP81.62e-2590187191
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                         a+g+k rhs ++T++g++dRRvRls ++a++f+d+qd+LG+d++ k+i+ L+++ak  i++l + +++ +s   ++++ + s ++++s+  
  Solyc05g032780.1.1  90 ATGRKYRHSNVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPCKAIDSLIKEAKVTIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPef 180
                         589***********************************************************99944444333455555555555554434 PP

                 TCP  89 ....kaa 91 
                             +  
  Solyc05g032780.1.1 181 sqenRGV 187
                         3222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-2391185IPR005333Transcription factor, TCP
PROSITE profilePS5136922.61193151IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MNHQCQVSDE EDGSEEEEEE EEEVFQENDI GNLQSHYQNQ QMPQSVCENP EKWANFTVSG  60
QELNKGTRRL KPKRAKTDVI EGHGGRIIRA TGRKYRHSNV STAKGPKDRR VRLSPNTAIQ  120
FYDVQDRLGY DRPCKAIDSL IKEAKVTIDA LGEFPNNFHS TKLNPKKMQY SFDQEQSPEF  180
SQENRGVPNS ECGVQDKQQE VNYDIPNMFS LY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1798151154Putative transcription factor PCF6
5zkt_B8e-1798151154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g032780.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2434740.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-56p20 map 1, complete sequence
GenBankAC2460780.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-12e23 map 1, complete sequence
GenBankAC2465810.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-67d8 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069120.11e-132transcription factor TCP10-like
TrEMBLA0A3Q7GIV41e-158A0A3Q7GIV4_SOLLC; Uncharacterized protein
STRINGSolyc05g032780.1.11e-159(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-33TCP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]