PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g020000.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 120aa    MW: 13702.6 Da    PI: 9.5853
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g020000.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer61.41.9e-191467357
         ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        +++Y   lkNhA + G ++vDGC+Ef+++ g  gt++a  Ca CgC R FHR ++
  Solyc05g020000.1.1 14 TIKYGIYLKNHATNFGDYSVDGCREFVKK-GYGGTKEAYICANCGCLRRFHRMNS 67
                        6789999*********************8.999*******************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-101574IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.5E-191567IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152316.1371766IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MTNSSNSNPS GDMTIKYGIY LKNHATNFGD YSVDGCREFV KKGYGGTKEA YICANCGCLR  60
RFHRMNSHSL YPPPILRSHF FHLHVHPHGG ENAPIISHPF MSQFVSIQYI RRPVFYNYR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and stems, present in siliques and seedlings, and weakly observed in petioles, leaves and flowers. {ECO:0000269|PubMed:16412086}.
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, such as ZHD5, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by preventing the expression of genes involved in gibberellic acid (GA), auxin and brassinosteroid signaling and by promoting the expression of abscisic acid (ABA)-responsive genes. Regulates several development aspects, including photomorphogenesis, apical dominance, longevity, flower morphology and fertility, as well as root and stem elongation. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:16412086, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g020000.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2471701e-137Solanum lycopersicum strain Heinz 1706 chromosome 5 clone sle-13l10 map 5, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239948.13e-15PREDICTED: mini zinc finger protein 3
RefseqXP_024173860.13e-15mini zinc finger protein 3-like
SwissprotQ9CA517e-13MIF1_ARATH; Mini zinc finger protein 1
TrEMBLA0A3Q7GJW91e-83A0A3Q7GJW9_SOLLC; Uncharacterized protein
STRINGSolyc05g020000.1.12e-84(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13748615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.13e-15mini zinc finger 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]