PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g018740.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 120aa    MW: 13674.5 Da    PI: 9.2769
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g018740.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer70.52.8e-221467357
         ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        +++Y  ClkNhA + G ++vDGC+Ef++  g++gt++a  Ca CgC R+FHR ++
  Solyc05g018740.1.1 14 TIKYGICLKNHATNFGDYSVDGCREFVKR-GDDGTKEAYICANCGCLRSFHRMNS 67
                        789*************************8.999*******************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-121464IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.1E-221567IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.9E-161665IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.2821766IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MSNNSSSNPS GDMTIKYGIC LKNHATNFGD YSVDGCREFV KRGDDGTKEA YICANCGCLR  60
SFHRMNSHSL YHPPILRSRF LHPHIHPHGR ENAPIISHPF MSRFVLVQYI RRPVFYNHP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g018740.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2471700.0Solanum lycopersicum strain Heinz 1706 chromosome 5 clone sle-13l10 map 5, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7GF122e-83A0A3Q7GF12_SOLLC; Uncharacterized protein
STRINGSolyc05g018740.1.14e-84(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13748615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.13e-18mini zinc finger 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]