PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g015650.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CAMTA
Protein Properties Length: 936aa    MW: 105304 Da    PI: 6.2464
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g015650.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.43.2e-54131273116
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e + rwlk+ e++ iL n+e+h+l++e+ ++p+sgsl+Lyn++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np
  Solyc05g015650.2.1  13 REaQIRWLKPAEVLFILRNHENHQLSSEPSQKPPSGSLFLYNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEQNP 103
                         55589************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhyle 116
                         +fqrr+yw+L+ ++++ivlvhy++
  Solyc05g015650.2.1 104 NFQRRSYWMLDPAYDHIVLVHYRD 127
                         **********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.4078134IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7511129IPR005559CG-1 DNA-binding domain
PfamPF038598.4E-4814127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.3E-8392479IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.13E-18395479IPR014756Immunoglobulin E-set
PfamPF018332.4E-9395478IPR002909IPT domain
CDDcd001020.00102395479No hitNo description
Gene3DG3DSA:1.25.40.204.7E-12578681IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.053594659IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-11596681IPR020683Ankyrin repeat-containing domain
CDDcd002041.07E-9599685No hitNo description
SMARTSM002480.0038627656IPR002110Ankyrin repeat
PROSITE profilePS5008811.06627659IPR002110Ankyrin repeat
PfamPF136379.6E-5629681No hitNo description
SMARTSM0001515729751IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.492730759IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.78E-5780836IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000154.3788810IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529789818IPR000048IQ motif, EF-hand binding site
PfamPF006120.014791809IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0056811833IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791813837IPR000048IQ motif, EF-hand binding site
PfamPF006125.8E-5814833IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MAESGYDIND LVREAQIRWL KPAEVLFILR NHENHQLSSE PSQKPPSGSL FLYNKRVLRF  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE QNPNFQRRSY WMLDPAYDHI  120
VLVHYRDIIE GRQNPAFMSE SSPISSAFSP SPSSYSTPHT GSTGIASECY EQYQNQSSPG  180
EICSDAIINN NGTTDTIGRT EEVISSPGLE MCQALRRLEE QLSLNDDSLK EIDPLYGDAI  240
NDDSSLIQMQ GNSNRLLLQH HSGESSESHH RDLTQDAHVW KDMLDHYGVS AAAESQTKYL  300
HKLDENAMLQ TLSERRAIEA YESYKWRDFS DKETQTAPVQ AFKQLEDFKY PTYPPDITTF  360
GSNPDEYTTI FDQDQIGTSL EDEMSLTIAQ KQKFTIRHIS PDWGYSSEPT KIVIIGSFLC  420
NPSECTWTCM FGDIEVPIQI IQEGVICCQA PRHLPGKVTL CVTSGNRESC SEVREFEYRV  480
KPDDCARNNQ PDVEGAYRST DELLLLVRFV QLLLSDLSVQ KRESSELGND LLEKSKASED  540
SWSQIIESLL FGTSVPMVTI DWLLQELLKD KFQQWLCSKL QQKDNQIDCS LSKKEQGIIH  600
MVAGLGFEWA LHPILNAGVS ANFRDINGWT ALHWAARFGR EKMVASLIAS GASAGAVTDP  660
SSRDPVGKTA ASIVALTSHL SSLTLEESEL SKGTADVEAE RTISSISNTS ATINEDQRSL  720
KDTLAAVRNA AQAAARIQSA FRAHSFRKRQ QREFGVSATT SVDEYGILSN DIQGLSAASK  780
LAFRNPREYN SAALAIQKKY RGWKGRKDFL AFRQKVVKIQ AHVRGYQVRK QYKVCWAVGI  840
LEKVVLRWRR RGVGLRGFRH DTESIDEIED EDILKVFRKQ KVDAALDEAV SRVLSMVESP  900
GARQQYHRIL EKYRQSKAEL EGADSETAST AHGHV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.168620.0fruit| leaf| root| trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g015650.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660480.0Solanum lycopersicum calmodulin-binding transcription factor SR2L mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266135.20.0calmodulin-binding transcription factor SR2L
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A3Q7GGC90.0A0A3Q7GGC9_SOLLC; Uncharacterized protein
STRINGSolyc05g015650.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]