PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g015330.1.1
Common NameLOC101265544
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 145aa    MW: 16239.7 Da    PI: 9.9564
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g015330.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC55.51.3e-17221061598
               NF-YC  15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 
                         + ++ ++P++r+kki+k d+d+++i +ea  l++ + elf+  l+ +s   a e+kr+t+k   +  av+r + + dfl+d  p 
  Solyc05g015330.1.1  22 ETHQLQIPISRVKKIMKLDQDINKINSEALYLIASSTELFLELLAEKSAQVALEKKRKTIKLEHLRVAVKRHKpTSDFLLDSLPM 106
                         5567899*********************************9999*************************9976489*****9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.1E-2021107IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.4E-212391IPR009072Histone-fold
PfamPF008081.5E-192790IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MTRVLDTMPG EDEEGTSTVA GETHQLQIPI SRVKKIMKLD QDINKINSEA LYLIASSTEL  60
FLELLAEKSA QVALEKKRKT IKLEHLRVAV KRHKPTSDFL LDSLPMPSQP LDRSPKVQSR  120
PRSSTDNPLP SGTRRIEAFF QKCT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239516.21e-102PREDICTED: chromatin accessibility complex protein 1
TrEMBLK4BYP91e-102K4BYP9_SOLLC; Uncharacterized protein
STRINGSolyc05g015330.1.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Representative plantOGRP94721213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-48nuclear factor Y, subunit C13
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]