PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g014930.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 94aa    MW: 10719.7 Da    PI: 4.8609
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g014930.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.74.3e-095492241
                FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkr 41
                         Yn+YA   GF vrks+++++  n+e+t+r f Cs+egk+
  Solyc05g014930.1.1 54 AYNSYALAKGFGVRKSAKTYN-INKEVTRRLFLCSCEGKS 92
                        5***************99998.8999************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-65492IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MEETHIDKGS SLQEDSNVND NEYSTKANNV YSINKNFSFE IDMKFNFEEE SYNAYNSYAL  60
AKGFGVRKSA KTYNINKEVT RRLFLCSCEG KSD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.238381e-106root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g014930.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266793.13e-26PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLK4BYL12e-60K4BYL1_SOLLC; Uncharacterized protein
STRINGSolyc05g014930.1.13e-61(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1726931
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]