PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g012840.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 224aa    MW: 25252.2 Da    PI: 9.3426
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g012840.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.93.2e-3321122195
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                         a+g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s   ++++ + s ++++s+  
  Solyc05g012840.1.1  21 ATGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPef 111
                         589***********************************************************99944444333455555555554444444 PP

                 TCP  89 ....kaaksaa 95 
                             +  ++++
  Solyc05g012840.1.1 112 sqenRGVPNSE 122
                         33332233333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3122117IPR005333Transcription factor, TCP
PROSITE profilePS5136930.0132482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKPKRAKTDV IEGHGGRIIR ATGRKDRHSK VSTAKGPKDR RVRLSPNTAI QFYDVQDRLG  60
YDRPSKAIDW LIKEAKAAID ALGEFPNNFH STKLNPKKMQ YSFDQEQSPE FSQENRGVPN  120
SECGVQDKQQ EVNYDIPNLF SSSDGLKIPF LSDLQSYPHG HFLNFQSLQD DTILSSGNHH  180
QGSFFTTTSV NHFPSVLSQN QVFSHREPLQ SSFFPLMSDP LSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-202982154Putative transcription factor PCF6
5zkt_B6e-202982154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g012840.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2123030.0Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0298C03, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069120.11e-165transcription factor TCP10-like
TrEMBLA0A3Q7GFZ61e-164A0A3Q7GFZ6_SOLLC; Uncharacterized protein
STRINGSolyc05g012840.1.11e-165(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-37TCP domain protein 10
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]