PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g012490.1.1
Common NameLOC101247524
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 532aa    MW: 59518.8 Da    PI: 6.4581
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g012490.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041466488123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C+++F++   L  H r+H
  Solyc05g012490.1.1 466 HECPFCDRVFKSGQALGGHKRSH 488
                         78******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.1292119IPR007087Zinc finger, C2H2
SMARTSM003550.1592114IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.11E-893114No hitNo description
PfamPF139124.7E-793116IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576673.09E-5386418No hitNo description
PROSITE profilePS501579.515390417IPR007087Zinc finger, C2H2
PfamPF139122.0E-8390414IPR007087Zinc finger, C2H2
SMARTSM003556.2390412IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
SuperFamilySSF576678.11E-8461488No hitNo description
PfamPF139121.4E-10465488IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432466488IPR007087Zinc finger, C2H2
SMARTSM003550.014466488IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280468488IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MFAEFLTEME DNQDLNFVGD KKSLCGNSLG GDMRSHVVEG NVEKFESWSS RETPHQSKFD  60
VGSHSGYGLR ENPKKTWRAV DSTFSPLPPQ ERVCQQCGKV FQSMKALCGH MACHSEKLVM  120
DSHSDTETDD DDDDEEEETK MKTRSLKTKR YKRLVAKPSN YCLVNNNSNN NNGVVNYGSS  180
SVSEIDELDQ EEVVAKCLMM LSRDTGNWNG VNSVVESSDN NSVVLETKSS STDMKFGRKD  240
RLKCVYNQNE TPGTKKLSGL DVDQAESESS DSGYFLDDNT IVESDISVDG FNRNGNSKWS  300
TSQMSHAESG VDKGKGLNRT KKYPIESRKD LTAECDYDYY AIASYIDKCE PRKRMKDSSY  360
HSELGNKFVK KIKLGPKSSE GCNAIQKKKY ECLNCKKSFN SYQALGGHRP CHKKANAYLE  420
SINGTGESSV DDKNRETFSS RTPASTAKDQ SYNPEKTIKP KKSQRHECPF CDRVFKSGQA  480
LGGHKRSHFV VGTEQNMNRS SAVKKVDDLL DLNLPAPLDD DDDEHAHLVS W*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g012490.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2250400.0Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0079C22, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239066.20.0uncharacterized protein LOC101247524
TrEMBLA0A3Q7H8C80.0A0A3Q7H8C8_SOLLC; Uncharacterized protein
STRINGSolyc05g012490.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Representative plantOGRP5450716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-34C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]