PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g010740.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 238aa    MW: 26591 Da    PI: 9.3531
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g010740.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.81.3e-12127102128
                 NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                         +kktLvfykgrap+gekt+Wvmheyrl
  Solyc05g010740.1.1   1 MKKTLVFYKGRAPRGEKTNWVMHEYRL 27 
                         8************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.613150IPR003441NAC domain
SuperFamilySSF1019415.23E-17150IPR003441NAC domain
PfamPF023654.1E-5127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKKTLVFYKG RAPRGEKTNW VMHEYRLIPN HPTEHTRYQD EWNVCRVLQK SNAGGKRYSS  60
NNNTLRIHVN PYTTLDQINP NTICISSQIM MPQVEHNTFQ LAMGKSSSSS SSAHTVINHP  120
DIQEVFRGVS SSNLMNLHPT LQSQMNNNLG GGNGFTISGL NFNLGGATTS QPGPPPPRPR  180
QDVSSSHVMM TAHDDQAGYG EDMSRFMVLK NSSHDLDNCW GMIYVVRILQ KIAYQTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g010740.1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246074.11e-116NAC domain-containing protein 79
TrEMBLK4BXP61e-178K4BXP6_SOLLC; Uncharacterized protein
STRINGSolyc05g010740.1.11e-179(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2779222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.24e-20NAC domain containing protein 38
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]