PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g009900.1.1
Common NameLOC104647293
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 354aa    MW: 40361 Da    PI: 9.2561
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g009900.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.83.9e-381352412133
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 
                         +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWL+ ++k aikel ++ s+ +                      
  Solyc05g009900.1.1 135 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLFSKSKNAIKELSRNISQES---------------------- 203
                         79**************************************************************33333...................... PP

                 TCP  93 saakskksqksaasalnlakesrakarararertrekmrik 133
                            +s++++++++ +l +  +s +  ra+ re+t+ekm+ik
  Solyc05g009900.1.1 204 ---NSSDQNNDDHRKLRKIGSSDKPIRAKTREKTKEKMMIK 241
                         ...22334445554466666777777777777788877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-37135253IPR005333Transcription factor, TCP
PROSITE profilePS5136936.873137195IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MFPKSNIIHD PFSFTSQELL KQSYSTHDQN PNSPSKVVED EDHPFFLNNF FPSPFLDDHE  60
LPLNQIFSQK HHQKQEASDN HDINQADPDN TIKDNHSVDN SRSTQLNTKI MGDQSSNPAI  120
SSKKRKLSAK PRRRTGKKDR HSKICTAQGV RDRRMRLSLQ IARKFFDLQD MLGFDKASNT  180
IEWLFSKSKN AIKELSRNIS QESNSSDQNN DDHRKLRKIG SSDKPIRAKT REKTKEKMMI  240
KLGHNKKGNQ ELDETNPMST IDPKLGSNPK SLEHQFANVG IMERYLGGAS YSSITSIFDY  300
DNNGVIKGNI DISDNCFNMG ILENCSMTNE VQIPFSGNNP SSIYLDYSRF HQF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123133KRKLSAKPRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g009900.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9210670.0Solanum lycopersicum BRANCHED2b gene, partial sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010320783.10.0transcription factor TCP12-like
TrEMBLA0A3Q7GFQ10.0A0A3Q7GFQ1_SOLLC; Uncharacterized protein
STRINGSolyc05g009900.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-32TCP domain protein 12
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]