PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g009660.2.1
Common NameLOC101247526
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 485aa    MW: 53297.6 Da    PI: 6.578
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g009660.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-09196237546
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                         k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++Lk
  Solyc05g009660.2.1 196 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQELK 237
                         7789*************************9888888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-7190239No hitNo description
SMARTSM003386.3E-7192257IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.507194238IPR004827Basic-leucine zipper domain
PfamPF001701.2E-6196237IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.61E-6196238No hitNo description
CDDcd147082.72E-21196247No hitNo description
PROSITE patternPS000360199214IPR004827Basic-leucine zipper domain
PfamPF141448.2E-30281354IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MQAFKEAAVI NNNNNSNSNS NSSMYCHSSY YLRGDEDSRL AARFADIGEL EQSTGFTQDD  60
AVDLSRSTVY GEMRPNNVGI VSCNNNNLHF GELNTSIGSS ETGVETGRFM LQKAQTGMVG  120
GGGGGGGVVG GGVALGNVQH FENWGDSGIA DHSQQTDTST DVDTDERNHQ GQGVQHGALI  180
AVDSMDLSKV KLGDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLS QLEQELKRAR  240
QQGIFIANGY AGDQSLSAGG NGALAFDMDY ARWLDEHQRL ISDLRSAVNS HRGDNELRHL  300
VDGVMSHYDE KFKLKSVGLK ADVFHMLSGM WKTPVERCFM WLGGFRSSEL LKILGNHLEP  360
FTEQQLIGIC NLQQSSQQAE DALSQGMEAL QQLLIDTLSS TSLGPSGSGN VADYMGQMAI  420
AMNQLATLEN FLYQADLLRQ RTLQQLHRIL TTRQAARALL VISDYMSRLR ALSSLWLARP  480
KDQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.140531e-139callus| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g009660.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239421.10.0transcription factor TGA2.3-like
SwissprotQ415581e-176HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLM1AZL10.0M1AZL1_SOLTU; Uncharacterized protein
STRINGSolyc05g009660.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-132bZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]