PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g009320.2.1
Common NameLOC101254088
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 255aa    MW: 28068.7 Da    PI: 6.273
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g009320.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260927e-294106198
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C l+p +     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++q
  Solyc05g009320.2.1   4 SCNGCRVLRKGCSENCSLRPSLqwiksPDSQANATVFLAKFYGRAGLINLINAGPQHLRPAIFRSLLYEACGRIINPVNGSVGLMCSGNWQ 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallk 98 
                          +q ++e +l +
  Solyc05g009320.2.1  95 RCQDAVESVLKG 106
                         ***999988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2843109IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS LRPSLQWIKS PDSQANATVF LAKFYGRAGL INLINAGPQH  60
LRPAIFRSLL YEACGRIINP VNGSVGLMCS GNWQRCQDAV ESVLKGSTIM QVPINSDDDN  120
NSTDQIVPLK GCDIRHVSKY NSTNSDNQQV KTRNGRLKRK GSTFDSAASA SVEVEAAEEY  180
LLKNQPPLKF SITGWDQFEE REDEMIKRSQ SHDSFSVETV EPTLLVNRVD PVKLEEDGDL  240
LGLDLTLGLM SPTG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.81610.0callus| leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g009320.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265161e-06Solanum lycopersicum chromosome 2 clone C02SLe0053H21, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238927.10.0LOB domain-containing protein 42
SwissprotQ9M8861e-70LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A3Q7GEH20.0A0A3Q7GEH2_SOLLC; Uncharacterized protein
STRINGSolyc05g009320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-71LOB domain-containing protein 41
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]