PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g009250.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 376aa    MW: 41540.6 Da    PI: 8.3594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g009250.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.81.7e-10136176650
                 AP2   6 VrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaar 50 
                         Vr +k +g+++ eIrd +     + kr++lg+f t+eeA + +   +
  Solyc05g009250.1.1 136 VRKRK-SGKFATEIRDpF-----SkKRIWLGTFNTPEEASEVYQSKK 176
                         89888.7*********66.....44**************99886655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.973127192IPR001471AP2/ERF domain
CDDcd000184.75E-14136172No hitNo description
SuperFamilySSF541718.5E-10136180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-14136181IPR001471AP2/ERF domain
SMARTSM003801.3E-6136186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MKSKIKQDCI DENEVIEIER TIRVKISDPD ATESSSDDEK QEKRPKIIVH EIVQKKVKIQ  60
SFLLNSKNPL DFYQLPPPRV RKRKYQKKGV SAKSGNPPLM ADSQNLDLTK VKTRFSLKNR  120
SPLSFEQSSG KLPPMVRKRK SGKFATEIRD PFSKKRIWLG TFNTPEEASE VYQSKKLEFQ  180
EKLEKARNAN VDKVISAKFE LGSSSSSAPP LMADYQNTDS SNESVDRLKK AKNAKENMVI  240
SAKFELGSSS SSDPSLIADS QNTDSSNESG DILKKSKNAK EKMVIFANSE PGSSPSEPIL  300
MVDEIDEQLN KAINANVAKG ISSKSELGSS SSDQVDAQTS DSSNGVEESD EDLWMGQWIQ  360
ISGLMDDVSG SFVGT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.184420.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g009250.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238921.10.0ethylene-responsive transcription factor CRF4
TrEMBLA0A3Q7GFC00.0A0A3Q7GFC0_SOLLC; Uncharacterized protein
STRINGSolyc05g009250.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1553156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.19e-15ERF domain protein 11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]