PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g007580.1.1
Common NameLOC101267309
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 298aa    MW: 32814.2 Da    PI: 7.6139
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g007580.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer110.31e-3451109259
         ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                         ++v YkeClkNhAas+GghavDGCgEfmps++++ +++ +lkCaACgCHRnFHRre+++
  Solyc05g007580.1.1  51 TAVIYKECLKNHAASIGGHAVDGCGEFMPSPESTpSDPISLKCAACGCHRNFHRREPSD 109
                         6799***************************9999********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-3053115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2953107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.3E-3155106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.80555106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.69E-19165233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-30165234IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-26172229IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELTYSINPT PTPSSTKTPD SEVDTPPLIK PLSFTNGNNH HSHHNQSPPC TAVIYKECLK  60
NHAASIGGHA VDGCGEFMPS PESTPSDPIS LKCAACGCHR NFHRREPSDD SSPPAHFIDF  120
RRHIFPPIKR FSPSPTPSPS LSPSLSPPPL PSLFQPQPVT PTGLKSENPN GRKRFRTKFT  180
AEQKEKMHSF SEKLGWKLQK CDEAAVDEFC NEIGVGKGVL RVWMHNNKNT FGKKDYQISN  240
NSSRDHSFEN KNGFNINGTA SSNEEEDQHR NNNNDNSTTS NCELHLHIST NASSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-231732301875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g007580.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095890.0Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05HBa0145P19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238801.10.0zinc-finger homeodomain protein 10
SwissprotQ9LXG04e-60ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A3Q7GCL40.0A0A3Q7GCL4_SOLLC; Uncharacterized protein
STRINGSolyc05g007580.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.17e-58zinc finger homeodomain 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]