PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g006310.1.1
Common NameLOC101267308
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 251aa    MW: 28394.1 Da    PI: 8.7608
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g006310.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028102124123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C k F ++  L  H++ H
  Solyc05g006310.1.1 102 FECQYCLKQFANSQALGGHQNAH 124
                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-5100129No hitNo description
Gene3DG3DSA:3.30.160.606.7E-5100128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.448102129IPR007087Zinc finger, C2H2
PfamPF139121.1E-5102126IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAKDVVSSTF QSPSSNINGE NYHESSSKSC IENNNNNNKK LKIFGFELID NPKRSPKKVQ  60
NNSSKEDQES VNSSSASTVS SGNIHHNQEK ISSNHEEIMK KFECQYCLKQ FANSQALGGH  120
QNAHKKERMR KKRLQLQARK ASLSCYLQPF HNQNYNNNNN NIINYQFHDP QFNVYEESQI  180
SFNPNYDYQV SSEGGGTNWP FHQDSNNCTF TLTHGGNNYM KPPSTILDNS SSTKQKSSCK  240
HLDLQLGLSL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.234620.0cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g006310.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238719.10.0zinc finger protein 5
TrEMBLM1B9Q81e-137M1B9Q8_SOLTU; Uncharacterized protein
STRINGSolyc05g006310.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Representative plantOGRP1020968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.17e-16zinc finger protein 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]