PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g081370.2.1
Common NameLOC101261325
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 452aa    MW: 49014.6 Da    PI: 9.7313
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g081370.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-06203225223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          CpdCg++F+  ++L++H+ + H
  Solyc04g081370.2.1 203 ACPDCGEVFPKIESLEHHQAVkH 225
                         6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280202225IPR007087Zinc finger, C2H2
PROSITE profilePS501578.725202230IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.103.1E-7227447IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563992.01E-18227447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MKKRTSSTIA LFFSHFLALF LMALLTFLPE TSEKNQPSKR RKKQQKQNKE KQKQPSSWDQ  60
FKNLLTCKQI ENSTVHDPAS KNPPPSAAAA APAGAYSKLS SCSSICSFRD VVHGNTRVVH  120
RADNSPESSS LGQETRLLSK NKTSHHDPSS SSSRSLARSN GNGSSTYTTS SRGMQFRKLS  180
GCYECHMIVD PSRYPLPRST ICACPDCGEV FPKIESLEHH QAVKHAVSEL GPEDSSRNIV  240
EIIFKSSWLK KDNPICKIER ILKVHNTKRT IQRFEDCRDA VKIHAVATGK KNPRCAADGN  300
ELLRFYCTSL TCVLGARGSS SLCGSVPGCG VCTTIRHGFQ GNKTSGVRTT ASSGRAHDCL  360
GSGMARRRAM IVCRVIAGRV KQNVGASPTK EEENCSGSGS GSGSGLSATG STIYNSVAGH  420
VGIYSNLEEL YVFNPRAILP CFVVIYEALE S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.136010.0callus| flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g081370.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1937780.0Solanum lycopersicum chromosome 4 clone C04HBa0101P06, complete sequence
GenBankCU2225380.0S.lycopersicum DNA sequence from clone LE_HBa-331L22 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238353.10.0uncharacterized protein LOC101261325
TrEMBLK4BVL60.0K4BVL6_SOLLC; Uncharacterized protein
STRINGSolyc04g081370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-147C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]