PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g081350.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family E2F/DP
Protein Properties Length: 398aa    MW: 44001.3 Da    PI: 6.0696
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g081350.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP78.85.1e-25137202171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         r+++sL+llt+kf+ ll+++++g+++ln+ a+ L   +v   +RRiYDi+NVLe+++liek+ k++irwkg
  Solyc04g081350.2.1 137 RYDNSLGLLTKKFIGLLQEADDGTLDLNHSAEVL---EV--AKRRIYDITNVLEGIGLIEKTTKSRIRWKG 202
                         689*******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-25137204IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-30137202IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.13E-15137200IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.2E-22139202IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.76E-35213319No hitNo description
SuperFamilySSF1440748.89E-23214318No hitNo description
PfamPF164211.8E-22218316IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSTTAGENVD LNLSLATPLH LRSSPSPTPT AIAVTPYRSH PRILSNLCSE SLTGNPQASA  60
TFGFNPQNNE IEKSKEYNCG SGVSQRSLAS NYSPVEQAPS ARTKQPSKRK SSRDTIEATK  120
GINADLLDNL NLGVTYRYDN SLGLLTKKFI GLLQEADDGT LDLNHSAEVL EVAKRRIYDI  180
TNVLEGIGLI EKTTKSRIRW KGFQSTKSQG LDNQVSTLKG QIGYLSAEDH RLDSCIREKL  240
EQIRNLESDM NCQKSLFLTE EDIRNLPYFR DKTLIAIKAP YASSIEVPDP CEDVDLERQY  300
KLILRSTTGP IDLFLLSKQG RQHEDITIKH DKSMDSVSAA KKMDDAYPSP AHPCSLDSTD  360
SKLSGVHKIV PSHNSIDDDY WLRSEEAVSA TALWGIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-22133203374PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.254318e-73flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g081350.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1937781e-107Solanum lycopersicum chromosome 4 clone C04HBa0101P06, complete sequence
GenBankCU2225381e-107S.lycopersicum DNA sequence from clone LE_HBa-331L22 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069264.10.0transcription factor E2FC isoform X1
TrEMBLA0A3Q7GAI00.0A0A3Q7GAI0_SOLLC; Uncharacterized protein
STRINGSolyc04g081350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126252022
Representative plantOGRP12251749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.21e-77E2F/DP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]