PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g080500.2.1
Common NameLOC101244580
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 92aa    MW: 10481.9 Da    PI: 9.8083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g080500.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.8e-10348346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        +WT+   +++ +a +++  +   +W+ Iar++g g+++ ++k ++  
  Solyc04g080500.2.1  3 SWTARQNKKFEEALALYDRDtpdRWHNIARCVG-GKSAAEVKRHYEV 48
                        6*****************99*************.**********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.5E-7152IPR001005SANT/Myb domain
PROSITE profilePS5129311.611154IPR017884SANT domain
SuperFamilySSF466891.88E-13357IPR009057Homeodomain-like
PfamPF002493.9E-7347IPR001005SANT/Myb domain
CDDcd001671.38E-7350No hitNo description
Gene3DG3DSA:1.10.10.608.4E-6356IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010114Biological Processresponse to red light
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASWTARQNK KFEEALALYD RDTPDRWHNI ARCVGGKSAA EVKRHYEVLV KDIMQIENGQ  60
VPLPNYKAAA ETNNRSGYAN EHRLLKNLKL Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-284911193RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g080500.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4578111e-138S.lycopersicum DNA sequence from clone LE_HBa-132M8 on chromosome 4, complete sequence
GenBankCU4682391e-138S.lycopersicum DNA sequence from clone SL_MboI-124K5 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238608.12e-63protein RADIALIS-like 6
SwissprotQ1A1732e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3Q7G7H25e-62A0A3Q7G7H2_SOLLC; Uncharacterized protein
STRINGSolyc04g080500.2.19e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-38RAD-like 6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]