PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g078690.2.1
Common NameLOC104647187
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 315aa    MW: 34108.6 Da    PI: 5.1994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g078690.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-16138184455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Solyc04g078690.2.1 138 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 184
                         6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.30E-18128188No hitNo description
Gene3DG3DSA:4.10.280.106.6E-19131191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-20131193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-14138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MADPYRTNPH ASSSLESEDM SSFFLNFLQG TPASSSATAA AGFYNRSGPA PVAESSSSLN  60
FSDPGRFYAA EFKEGVENVF ASAGLGECDG MNSANRREFL EDDKVDNFGF SSEECDGLDM  120
PSDPTHPRSS KRSRSAEVHN LSEKRRRSRI NEKLKALQNL IPNSNKTDKA SMLDEAIEYL  180
KQLQLQVQIL TLRNGLSLYP GYVPGSLQSV QLPSGNEFDG RSFMLSANGG ATLPVNREMP  240
QTAFEISNQN PSGKPTITSH NTENAVALET TIQNHYGLLN HLASSKDMCR DNTLSRLHLD  300
MSCSGNNSSS GVSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010320324.10.0PREDICTED: transcription factor SPATULA-like
TrEMBLK4BUV40.0K4BUV4_SOLLC; Uncharacterized protein
STRINGSolyc04g078690.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-37bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]