PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g078670.2.1
Common NameLOC101249353
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 273aa    MW: 30073.1 Da    PI: 6.7094
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g078670.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.52.2e-2691381128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyW 83 
                         lppG +F P+d++l+++yL  k   ++     ++ i+e+d+y+++P +Lp     ++    ++++w+ F+ r  k       +r +  gyW
  Solyc04g078670.2.1   9 LPPGTQFYPSDQQLISYYLSSKNGVDHrnGVGFDLIREIDLYNFDPFNLPDsacfRYGRggRKRHWFCFVARVLKG-----GRRRAGGGYW 94 
                         79******************996555532445688**************944666333422444666666665543.....2445689*** PP

                 NAM  84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+ g+ ++v+ +  ++ +vg++k++ fy g+    +ktdW+m ey+l
  Solyc04g078670.2.1  95 KKRGRVRDVVGAgaGKIVVGTRKSFEFYLGDC---TKTDWLMYEYAL 138
                         **********99767778**********7655...56********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-326154IPR003441NAC domain
PROSITE profilePS5100536.5759154IPR003441NAC domain
PfamPF023651.0E-1710138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGDTTSFSLP PGTQFYPSDQ QLISYYLSSK NGVDHRNGVG FDLIREIDLY NFDPFNLPDS  60
ACFRYGRGGR KRHWFCFVAR VLKGGRRRAG GGYWKKRGRV RDVVGAGAGK IVVGTRKSFE  120
FYLGDCTKTD WLMYEYALTG HPMASFVLCR VFIKSHHGNN LSGHVFSSNG EEIVATVRHI  180
GIQFDGSAAL VTGSKMHDEN MIDQENDVSK LPSGLVPDLN GQVVAENVAK QICLESNGPP  240
ILNDYSAQEL IAILEGDFIE LDDLLCPLPG IN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-23516016174NAC domain-containing protein 19
3swm_B4e-23516016174NAC domain-containing protein 19
3swm_C4e-23516016174NAC domain-containing protein 19
3swm_D4e-23516016174NAC domain-containing protein 19
3swp_A4e-23516016174NAC domain-containing protein 19
3swp_B4e-23516016174NAC domain-containing protein 19
3swp_C4e-23516016174NAC domain-containing protein 19
3swp_D4e-23516016174NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391GGRRRAGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g078670.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238138.10.0NAC domain-containing protein 19-like
TrEMBLA0A3Q7G9000.0A0A3Q7G900_SOLLC; Uncharacterized protein
STRINGSolyc04g078670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135281314
Representative plantOGRP1150445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.16e-20NAC domain containing protein 19
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]