PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g077990.2.1
Common NameLOC101261022
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 205aa    MW: 22271.3 Da    PI: 5.2866
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g077990.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.65.5e-302104198
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlrr+C+++C+l+ ++     p++q +++ +v k+FG+s +++l++a+p+++r+++++sl++eA+ r+ +Pv Gavg++++++++
  Solyc04g077990.2.1   2 SCNGCRVLRRRCSDNCTLRTCLdgiddPQAQGNATLFVSKFFGRSDLMSLIAAVPQNRRPALFKSLLFEACGRTVNPVTGAVGLLSTGNWH 92 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallk 98 
                         ++q++++++l++
  Solyc04g077990.2.1  93 VCQKAVQTVLAG 104
                         *****9998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.8521107IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSCNGCRVLR RRCSDNCTLR TCLDGIDDPQ AQGNATLFVS KFFGRSDLMS LIAAVPQNRR  60
PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVQT VLAGGNLRPV LAGILTPPYF  120
DNSFRCGGAW DMPNQFCNKS DSMFIDGSEQ IEGMEWISSE KRWNTSSCFG SETELSDVSL  180
GLDSGYGYAE CVKGEEPKLL NLFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g077990.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238097.21e-150LOB domain-containing protein 38-like
SwissprotQ9SN233e-51LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A3Q7G6A51e-149A0A3Q7G6A5_SOLLC; Uncharacterized protein
STRINGSolyc04g077990.2.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-53LOB domain-containing protein 38
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]