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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc04g077490.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 653aa MW: 71579.4 Da PI: 7.4273 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.7e-16 | 303 | 362 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Solyc04g077490.2.1 303 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 362 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 46 | 1.3e-14 | 405 | 456 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Solyc04g077490.2.1 405 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 456 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.63E-22 | 303 | 370 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-16 | 303 | 372 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.9E-13 | 303 | 362 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-29 | 304 | 376 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 304 | 370 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-16 | 304 | 371 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 305 | 316 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.02E-26 | 405 | 466 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-18 | 405 | 466 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.2E-10 | 405 | 456 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.124 | 406 | 464 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 406 | 470 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-18 | 406 | 464 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-6 | 446 | 466 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MKSMNDDSRS SNNNISNNNS AAANTNWLGF SLTPHMKMEV TNSSDTQHQH QFAQSFYLSS 60 SPPPPMNVST TSALCYENNP FHSTLSVMPL KSDGSLCIME ALSRSHADAM VQSSSPKLED 120 FLGGASMGNS QYGSHDREAM ALSLDSLYYH QNEEEIQVHS HHPYYSPMHC HGMYHQETLL 180 EETKPTQISN CEAQMTGNEL KSWGQYAEQH AIDQHINATC SMVAAAAAAA SGGGGGTSGC 240 NELQSLSLSM NPGSQSSCVT PRQISPSGLE CVAVESKKRA SGKVAQKQPV HRKSIDTFGQ 300 RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QTRKGRQVYL GGYDMEEKAA RAYDLAALKY 360 WGPSTHINFP LENYQKELDD MKNMTRQEYV AHLRRKSSGF SRGASIYRGV TRHHQHGRWQ 420 ARIGRVAGNK DLYLGTFSTQ EEAAEAYDVA AIKFRGVNAV TNFDISRYDV EKIMASNTLP 480 AGELAKRTKE RESIEYNNNT GGVGGQKNEE CVDNNNNGTI TDWKMVLYQT SNPSLGSSYR 540 NPTSFSMALQ DLIGIDSMTN SNNHHHATIL DHEQNKIGNP FSNASSLVTS LGSSREASPD 600 KSATAASLVF AKPTKFAVPT ATSVNACIPS AQLRPIPVSM AHLPVFAALN DA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in floral primordia, in STM-negative region, then in sepal primordia. As sepal develops, progressively confined to a basal core before disappearing. Present in stamen primordia, then confined to a central region as they become stalked and develop locules. Later reduced to procambial cells as stamen mature. From petal primordia, expressed on the lateral edges of developing petals and finally confined to petal epidermis before disappearing. Present in carpel primordia, then in inner side of carpels especially in the placenta. Strong levels in ovules primordia and young ovules, then localized in integuments initiation zone before being confined to inner integument cells that will differentiate into the endothelium. Expressed in the distal half of the funiculus throughout ovule development and later extends into the chalaza. After fertilization, expression shift to the embryo. First on the apical part at the globular stage, then in cotyledons primordia, and later in cotyledons during the torpedo stage. As cotyledons grow out, expression becomes limited to a plane separating adaxial and abaxial parts. Excluded from the embryonic central region (ECR). In seedlings, found in leaf primordia then in central and lateral actively developing regions of extending leaves. {ECO:0000269|PubMed:10656774, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9671577}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing flowers. Also present in mature flowers, siliques and seedlings, but not in mature roots, leaves and stems. Expressed in ovules and in vegetative and floral primordia. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc04g077490.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001287930.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT-like | ||||
Swissprot | Q38914 | 1e-163 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A060PVV0 | 0.0 | A0A060PVV0_SOLLC; AINTEGUMENTA homolog | ||||
STRING | Solyc04g077490.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-163 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc04g077490.2.1 |