PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g076360.2.1
Common NameLOC101255687
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 572aa    MW: 60773.6 Da    PI: 10.4144
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g076360.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-08203249146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 
                         r++WT  Ed  l+ av+++G g+W+ I +t     Rt+ q+  rw +
  Solyc04g076360.2.1 203 RKAWTGAEDMELITAVQKYGEGNWANILKTDFkGDRTASQLSQRWAT 249
                         789*************************9844469999999999966 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.828198255IPR017930Myb domain
SuperFamilySSF466891.36E-12199253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-14199254IPR009057Homeodomain-like
SMARTSM007179.7E-8202253IPR001005SANT/Myb domain
PfamPF002491.8E-6203249IPR001005SANT/Myb domain
CDDcd116601.05E-14204252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MVEKRKVNKR GFVTEDDMST LLQRYTAFTM LTLLQEVGQV NGSKIDWNDL VKKTATGITS  60
AREYQMVWRH LAYRKVLLDK FDDNAQPMDD DSDLEYELES FPPVSSEAST EAAAWGKVFI  120
ASGALRDSNM SNGNTVEASL TIQIPNGQTS GTVAANSLQG ISAFGKKLTV PVTVQTQPMP  180
SVSAAEGLDT SGPATANLPR RRRKAWTGAE DMELITAVQK YGEGNWANIL KTDFKGDRTA  240
SQLSQRWATI RKQHVMMVGN GSHLSEAQLA ARHAVSMAFR DNVRAACPIS PNAGTNSGSG  300
PSNSSHFAAA DVASAGPQPK HQQDLVPSKP IIPKIPLPKP AINPDLMVKT AAMAASSRVA  360
THSGTAASLQ KAALSKKGVH IMPGGTPAVK SSVPGSFNGL PSNVHFMRTG LVSRPAGPSN  420
APQSGTQQLH APRTQQLQAP RSVSPAVQPK PTTVPSRTNA SSGVRSAPSS YPTTVLDVKS  480
KAAVSQENQI AVLSNTRGEK TQVIQAASLA NTPQQQVPKD QNFGDLLSGK VEGQTSVLCD  540
TVKKLGGESK ASRIWVQEKL TPSQETTSNK K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g076360.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237998.10.0uncharacterized protein LOC101255687
TrEMBLA0A3Q7G9160.0A0A3Q7G916_SOLLC; Uncharacterized protein
STRINGSolyc04g076360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.14e-65MYB_related family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]