PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g074320.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 274aa    MW: 31122.8 Da    PI: 8.6659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g074320.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-06114133120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C++C+k+F+r  nL+ H+
  Solyc04g074320.1.1 114 FSCHICHKTFNRYNNLQMHM 133
                         89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.85E-5109136No hitNo description
SMARTSM003550.55114136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-4114133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.388114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SMARTSM00355110161193IPR015880Zinc finger, C2H2-like
SMARTSM00355150198218IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEHSYFASSS RSIENQIEPF DFFADKTQNA FEFLSLSQPS NQNIEKMSNY EENPNWNNIE  60
DDVTVALHIG LPNSSNNNNN IPIDHNKSDG NIIGATTQYW IPTPSQILVG FTHFSCHICH  120
KTFNRYNNLQ MHMWGHGSQY RKGPESLKGT QPRAMLGIPC YCCEEGCKNN INHSRAKPLK  180
DFRTLQTHYK RKHGTKRFAC RKCGKCLAVK GDWRTHEKNC GKRWLCVCGS DFKHKRSLKD  240
HIASFGEGHG ASSPANNNSF DGVEVQRSAN FYV*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Developing ovules and young seeds. {ECO:0000269|PubMed:11782451}.
UniprotTISSUE SPECIFICITY: Restricted to the endothelium, the innermost cell layer of the seed coat and detected to a lesser extent in the other cell layers of the testa. {ECO:0000269|PubMed:11782451}.
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g074320.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238530.20.0protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-102TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A1U8GRW71e-173A0A1U8GRW7_CAPAN; protein TRANSPARENT TESTA 1-like
TrEMBLA0A2G3CNX81e-173A0A2G3CNX8_CAPCH; Protein TRANSPARENT TESTA 1
STRINGSolyc04g074320.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132641517
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]